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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68852267_68855383_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68852267 - 68855383
Intron Length:
3117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
ACTCCTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ACTCCTTCAACA
Flanking Amino Acid:
QYFVARRKFQQARKPYDVRD
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.1
0.48
0.9
66
33.9
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
60.3
0.32
1.5
67.51
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013856
68555383 - 68864288
308906