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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_68855479_68856508_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68855479 - 68856508
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCCCT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTGCTAATAATT
Flanking Amino Acid:
MMVRIKELQRRLDHSLGKPG
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
66.3
45.2
Major BPS
80
0.75
1
78.6
31
Major PPT
90.7
0.92
0.7
88.7
28.3
Minor 5ss
39.1
-1.2
3.4
57
47.3
Minor BPS
46.2
-0.2
1.8
62.94
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013307
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013856
68555383 - 68864288
308906