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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6890117_6890793_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6890117 - 6890793
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGGG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGACAT
U12 Branch Point Sequence:
GTGGCGCTGACA
Flanking Amino Acid:
ASSACAAVYKDGRADVVAND
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
55
44.1
Major BPS
49
-0
1.2
56.4
39.5
Major PPT
78.7
0.65
0.7
73.3
24.9
Minor 5ss
22.1
-3.2
3.4
28.8
43.7
Minor BPS
42.9
-0.5
2.4
55.62
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006517
6890060 - 6901132
11073