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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6890875_6890951_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6890875 - 6890951
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACCAA
U12 Branch Point Sequence:
TGGGGCTCACCA
Flanking Amino Acid:
AVVAFTESEEVVGLAAKQSR
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
47.5
-0.1
1.3
55
40.2
Major PPT
81.8
0.71
0.9
80.3
37.3
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
41.8
-0.6
2.2
51.79
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006517
6890060 - 6901132
11073