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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6891035_6891790_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6891035 - 6891790
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTTAT
U12 Branch Point Sequence:
TTTGTCTTCACA
Flanking Amino Acid:
VVKVKQILGRSSGDPQAQKY
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
63.5
0.34
1.4
57.4
49.1
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
64.5
0.45
1.9
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006517
6890060 - 6901132
11073