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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6891840_6892415_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6891840 - 6892415
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATGCTTCTAACA
Flanking Amino Acid:
QKYIAESKCSVVEKNGKLQY
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
78.2
37.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86
0.81
0.8
79.9
32.3
Minor 5ss
34.4
-1.8
2.8
43.3
43.8
Minor BPS
51.9
0.05
1.6
63.39
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006517
6890060 - 6901132
11073