About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6892719_6893704_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6892719 - 6893704
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TATGCCTTATCA
Flanking Amino Acid:
DFGENQKNALGEAAAAAGFN
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.1
40.1
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
74.5
0.55
0.9
68.5
36
Minor 5ss
29.4
-2.4
3.3
30
43
Minor BPS
67.3
0.54
1.7
76.55
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006517
6890060 - 6901132
11073