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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6893810_6894382_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6893810 - 6894382
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GACTTGTTAATA
Flanking Amino Acid:
GIGQDSPTGKSNVLVYKLGG
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
71.9
32.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86
0.81
0.9
84.5
30.4
Minor 5ss
38.6
-1.3
3.1
51.6
45.1
Minor BPS
50.6
0.01
2
60.37
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006517
6890060 - 6901132
11073