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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6896936_6898121_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6896936 - 6898121
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GAGGTTTGAAAG
Flanking Amino Acid:
VGFTADDINKVVLCGGSARI
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
42.8
-0.6
1.6
38.75
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006517
6890060 - 6901132
11073