About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6898338_6898722_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6898338 - 6898722
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGAAA
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
ECSAKDILYKGVDESGADKF
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
53.7
0.09
1.4
64.3
39.6
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006261
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006517
6890060 - 6901132
11073