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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6903147_6904139_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6903147 - 6904139
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTG
Flanking Amino Acid:
MEGWPGAWYVPCLASL
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.6
0.8
0.7
82
28.3
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
64.4
0.31
1.6
69.06
38.9

Associated Gene:

Gene:
SUV39H2
Ensembl Gene ID:
ENSAPLG00000006124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006352
6903128 - 6910177
7050