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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6904286_6905256_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6904286 - 6905256
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
GTTTCTGTATTT
Flanking Amino Acid:
EYLCDYKVEEGTEYYLVKWK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
70.7
0.47
1.1
68.1
41.7
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
50.6
0.1
2.2
76.04
41.4

Associated Gene:

Gene:
SUV39H2
Ensembl Gene ID:
ENSAPLG00000006124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006352
6903128 - 6910177
7050