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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6905929_6907357_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6905929 - 6907357
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATAATATGATG
Flanking Amino Acid:
NSFVMEYVGEVITSEEAERR
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
80
0.75
1
78.6
31
Major PPT
82.7
0.73
0.7
81.3
23.7
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
41.9
-0.7
1.7
44.14
35

Associated Gene:

Gene:
SUV39H2
Ensembl Gene ID:
ENSAPLG00000006124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006352
6903128 - 6910177
7050