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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69090523_69095268_R

Intron Information:

Intron Rank:
129280
Intron Class:
major
Intron Phase:
Intron Coordinates:
69090523 - 69095268
Intron Length:
4746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
CCATGTTAAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.2
0.86
0.6
87.5
22.7
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
40.9
-0.7
2.2
45.6
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039961
69089690 - 69095552
5863