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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6909173_6910067_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6909173 - 6910067
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCAGA
5'SS Class:
major
3'SS Sequence:
GTCTGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTCAAACA
Flanking Amino Acid:
EELTFDYQMKGSIDLTSDSA
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
61.5
44.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
67.7
0.4
1
60.4
40.4
Minor 5ss
40.3
-1.1
2.6
49.5
46.3
Minor BPS
49.6
-0
2
66.77
40.3

Associated Gene:

Gene:
SUV39H2
Ensembl Gene ID:
ENSAPLG00000006124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006352
6903128 - 6910177
7050