About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6917054_6917881_R


Intron Information:

Intron Rank:
12

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
6917054 - 6917881

Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACT|GTAAGTGGC

5'SS Class:
major

3'SS Sequence:
TCATTCACCTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTAAA

U12 Branch Point Sequence:
TTTTTCTTCATT

Flanking Amino Acid:
VGGTEDKVMELLQPLCRSYR

Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73
0.54
1.1
63.9
41

Major BPS
85.3
0.88
0.8
84.2
21.8

Major PPT
73.4
0.53
0.9
70.7
34.5

Minor 5ss
35.9
-1.6
3.3
53.5
43.7

Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
DCLRE1C

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

6914273 - 6927263
12991