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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6917971_6919002_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6917971 - 6919002
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
TTCTTCAAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCTTCTTCAAAT
Flanking Amino Acid:
CFSFHSSFSEIKDFLRHICP
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
68
0.4
1
68.7
36.2
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
65.6
0.57
1.6
81.38
40.3

Associated Gene:

Gene:
DCLRE1C
Ensembl Gene ID:
ENSAPLG00000005600
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005829
6914273 - 6927263
12991