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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69190137_69194224_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69190137 - 69194224
Intron Length:
4088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTCTGTTTACAT
Flanking Amino Acid:
GKKRRQTSLTDYYSAKKQIK
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.1
35.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.3
0.64
0.9
70.5
40.9
Minor 5ss
32.7
-2
3.1
39.1
46.7
Minor BPS
46.7
-0.1
2.1
65.2
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025878
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041870
69176983 - 69202649
25667