Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69190137_69202475_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

69190137 - 69202475

Intron Length:

12339

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTGAG

5'SS Class:

strong_major

3'SS Sequence:

CTGCTTCTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAC

Flanking Amino Acid:

GKKRRQTSLTGDNNEINRWI

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

70.1

35.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.4

0.55

0.8

73.1

31.8

Minor 5ss

32.7

-2

3.1

39.1

46.7

Minor BPS

76.4

0.81

1.2

82.98

29.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025878

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034063

69176983 - 69202649

25667