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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6919058_6919227_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6919058 - 6919227
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
AATTATATACCT
Flanking Amino Acid:
ERIKKTNVIVRTGESTYRAC
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
92.1
0.95
0.5
89.1
19.9
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
47.4
-0.1
2
69.63
40.9

Associated Gene:

Gene:
DCLRE1C
Ensembl Gene ID:
ENSAPLG00000005600
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005829
6914273 - 6927263
12991