About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6919913_6920046_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6919913 - 6920046
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
ATCAAGCTAATC
Flanking Amino Acid:
INLSEELGIKVHVNKLDMFR
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
85.3
0.79
0.7
84.5
30.4
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
40.1
-0.7
2.3
51.12
39.7

Associated Gene:

Gene:
DCLRE1C
Ensembl Gene ID:
ENSAPLG00000005600
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005829
6914273 - 6927263
12991