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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6920188_6920356_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6920188 - 6920356
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTGAACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAACT
Flanking Amino Acid:
DPKFYHIPSREECLNGILEL
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.9
0.54
1
69.4
41.2
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
77.9
0.96
1.3
91.24
31.2

Associated Gene:

Gene:
DCLRE1C
Ensembl Gene ID:
ENSAPLG00000005600
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005829
6914273 - 6927263
12991