About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6920430_6920674_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6920430 - 6920674
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
GATGCATTGATC
Flanking Amino Acid:
ARMELLHSGTRVKDIQSVYL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.8
37.5
Major BPS
76.2
0.65
1
67
39.8
Major PPT
85.9
0.81
0.6
85
22.5
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
50.4
-0
1.7
60.44
38.9

Associated Gene:

Gene:
DCLRE1C
Ensembl Gene ID:
ENSAPLG00000005600
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005829
6914273 - 6927263
12991