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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69271759_69272890_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69271759 - 69272890
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCATATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GTTTGCATATTT
Flanking Amino Acid:
ICALREELEMYKQWCMAMDQ
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
77.5
0.62
0.9
74.2
39.9
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
47.9
-0
2.2
73.58
43.4

Associated Gene:

Gene:
CREBL2
Ensembl Gene ID:
ENSAPLG00000013223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013766
69270912 - 69281412
10501