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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69273089_69281397_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69273089 - 69281397
Intron Length:
8309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
TCTTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTTGCAGAACA
Flanking Amino Acid:
MDDSKVVGGKVKKPG
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
36.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.6
0.8
0.8
77.3
35.9
Minor 5ss
29.4
-2.4
3.6
41.9
45.1
Minor BPS
49.2
-0
2.2
69.22
42.9

Associated Gene:

Gene:
CREBL2
Ensembl Gene ID:
ENSAPLG00000013223
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013766
69270912 - 69281412
10501