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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69328439_69335491_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
69328439 - 69335491
Intron Length:
7053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.7
0.78
0.7
79.1
26.6
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
68.6
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
DUSP16
Ensembl Gene ID:
ENSAPLG00000013015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013565
69313800 - 69365011
51212