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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69336091_69337197_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69336091 - 69337197
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCCTACTTGATT
Flanking Amino Acid:
ELIQHSAKHKIEIDCKQEVV
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
75.5
34.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
79.1
0.65
0.9
75
39.1
Minor 5ss
32.4
-2
3.9
48.7
47.8
Minor BPS
63.9
0.52
1.5
75.62
41.7

Associated Gene:

Gene:
DUSP16
Ensembl Gene ID:
ENSAPLG00000013015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013565
69313800 - 69365011
51212