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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69359708_69360369_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69359708 - 69360369
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGGTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCTGCTGATTT
Flanking Amino Acid:
PWLDKSVDFIEKAKASNGCV
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.4
0.57
1
69.4
40.8
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
46.3
-0.2
2.1
65.23
45.5

Associated Gene:

Gene:
DUSP16
Ensembl Gene ID:
ENSAPLG00000013015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013565
69313800 - 69365011
51212