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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69360494_69363834_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69360494 - 69363834
Intron Length:
3341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGTTCTTAAAAT
Flanking Amino Acid:
RMDMSLDEAYRFVKEKRPTI
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78.1
0.63
0.7
72.1
26
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
59.6
0.38
1.8
76.37
40

Associated Gene:

Gene:
DUSP16
Ensembl Gene ID:
ENSAPLG00000013015
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013565
69313800 - 69365011
51212