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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69392415_69445374_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69392415 - 69445374
Intron Length:
52960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAC
U12 Branch Point Sequence:
GCCAGATTAACT
Flanking Amino Acid:
EIPTFQPLLKGLLSGQTSPT
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
64.1
0.35
1.2
67.6
36.5
Major PPT
62.1
0.27
0.9
53.9
36.6
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
47.1
-0.1
2.1
62.45
47

Associated Gene:

Gene:
BORCS5
Ensembl Gene ID:
ENSAPLG00000013011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013540
69375013 - 69446205
71193