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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6940334_6942364_R

Intron Information:

Intron Rank:
134977
Intron Class:
major
Intron Phase:
Intron Coordinates:
6940334 - 6942364
Intron Length:
2031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TTCTCCTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
85
0.79
0.9
77.1
41.8
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
67.4
0.4
1.7
71.23
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019981
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044425
6939508 - 6942582
3075