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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_694272_695061_R

Intron Information:

Intron Rank:
9
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
694272 - 695061
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
CCCTCTCCTCCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CCTTCCTTACCT
Flanking Amino Acid:
WFYLLMNVITQYVCIRGVFI
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.9
-0
1.2
50.8
41.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
77.7
0.62
0.7
68.8
31.7
Minor 5ss
92.7
1.44
0.8
90
21.2
Minor BPS
72
0.77
1.7
83.33
44.1

Associated Gene:

Gene:
SLC35B4
Ensembl Gene ID:
ENSAPLG00000005885
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006109
693025 - 703911
10887