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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69449626_69453260_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69449626 - 69453260
Intron Length:
3635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTGTCATTAAAT
Flanking Amino Acid:
TGFVSYKIARDTYAQEDTSL
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
63.6
0.5
1.8
78.5
43.3

Associated Gene:

Gene:
MANSC1
Ensembl Gene ID:
ENSAPLG00000012979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013504
69448511 - 69454255
5745