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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69483604_69520018_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69483604 - 69520018
Intron Length:
36415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TAAATAATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTTAAAT
Flanking Amino Acid:
PRAIALDPARGFMYWTDWGE
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.7
0.31
1
56
43.1
Minor 5ss
39.7
-1.2
3.1
51.1
45.2
Minor BPS
73.3
0.81
1.3
84.29
36.6

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382