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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6950042_6950741_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6950042 - 6950741
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAAGGC
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATGT
Flanking Amino Acid:
QDHASGHDPEDRIINLVVGS
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
62.7
36.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.6
0.64
0.7
76.4
25.7
Minor 5ss
24.7
-2.9
3.2
32.7
42.3
Minor BPS
53.1
0.17
2.1
79.56
42.7

Associated Gene:

Gene:
TMEM243
Ensembl Gene ID:
ENSAPLG00000026222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033056
6949920 - 6953406
3487