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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6950793_6951162_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6950793 - 6951162
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTTCCCCCATA
Flanking Amino Acid:
VGSLTSLLLVVTLISAFVFP
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
75.4
0.57
0.8
69.2
30.4
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
48.8
-0.1
2.2
72.38
39.9

Associated Gene:

Gene:
TMEM243
Ensembl Gene ID:
ENSAPLG00000026222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033056
6949920 - 6953406
3487