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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6951268_6952934_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6951268 - 6952934
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTCATTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTAAGTAATA
Flanking Amino Acid:
SLCCISAGILIYWYRQGDLE
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.6
35.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.8
0.69
0.8
73.6
36.9
Minor 5ss
39.6
-1.2
2.7
53.3
37.4
Minor BPS
49.3
-0
2.3
73.53
38.3

Associated Gene:

Gene:
TMEM243
Ensembl Gene ID:
ENSAPLG00000026222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033056
6949920 - 6953406
3487