About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_695138_695470_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
695138 - 695470
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
YHHAVLFSQSEPFQIPVIGL
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
33.7
-1.9
3.4
49.9
46.4
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
SLC35B4
Ensembl Gene ID:
ENSAPLG00000005885
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006109
693025 - 703911
10887