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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69520217_69533133_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69520217 - 69533133
Intron Length:
12917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GGTACTCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACTTTTTTCACT
Flanking Amino Acid:
IHKSNLDGSHRQAVVKGSLP
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.2
40.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
62.3
0.28
1
59.9
41.5
Minor 5ss
32.6
-2
3.5
48.2
47.4
Minor BPS
61.4
0.44
1.7
77.06
40.2

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382