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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69543399_69543899_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69543399 - 69543899
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGACT
5'SS Class:
major
3'SS Sequence:
ATTTCCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTGGTTTAATA
Flanking Amino Acid:
PRAIVLDPMVGYMYWTDWGE
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.1
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.3
0.7
0.8
74.9
33.9
Minor 5ss
29
-2.4
3.1
32.8
41.8
Minor BPS
55.4
0.16
1.9
66.01
41.8

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382