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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6955745_6957933_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6955745 - 6957933
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCACTCTCATGT
Flanking Amino Acid:
SDLPSTYVTEDLGSPTIEQV
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.8
0.54
1
68.6
42
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
40.7
-0.6
1.9
50.8
43

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035017
6954678 - 6977951
23274
ENSAPLT00000009434
6953998 - 6976486
22489
ENSAPLT00000037691
6954678 - 6976486
21809
ENSAPLT00000036689
6954678 - 6976486
21809