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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69560350_69562138_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
69560350 - 69562138
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGATG
5'SS Class:
major
3'SS Sequence:
TGCATCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AAATTTCTAATT
Flanking Amino Acid:
RIYWTDISLKTISRAFMNGS
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.7
44.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
68.8
0.42
0.9
61.4
35
Minor 5ss
33.8
-1.8
3.6
47.3
48.3
Minor BPS
53.9
0.2
1.6
68.7
36.1

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382