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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69562366_69564659_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
69562366 - 69564659
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACTTGC
5'SS Class:
major
3'SS Sequence:
GACTTTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTTTTTGACT
Flanking Amino Acid:
PRALALDPAEGFMYWTEWGG
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
64.1
43.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75.9
0.58
1
73.6
40.7
Minor 5ss
45.6
-0.5
2.6
53
44.2
Minor BPS
77.4
0.94
1
88.54
29.3

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382