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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6956632_6957933_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6956632 - 6957933
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATAATTCTAATT
Flanking Amino Acid:
SDLPSTYVTESRSSLMCVLK
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85
0.79
0.7
77.9
30.9
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
50.2
0.09
1.6
68.23
36.6

Associated Gene:

Gene:
DMTF1
Ensembl Gene ID:
ENSAPLG00000009042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032608
6955743 - 6976404
20662