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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69570879_69572674_F

Intron Information:

Intron Rank:
13
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
69570879 - 69572674
Intron Length:
1796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTGT
5'SS Class:
weak_minor
3'SS Sequence:
TTTCCTTTTTTAG|A
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTTTCTTTCCT
Flanking Amino Acid:
IRKAQEDGSQSLTVVTSPVP
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.43
1.2
62.3
44.7
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
89
0.88
0.6
88.7
20.6
Minor 5ss
75.2
0.85
1.8
82.7
36.6
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382