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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69573273_69578223_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69573273 - 69578223
Intron Length:
4951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAG
5'SS Class:
major
3'SS Sequence:
TTTATTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTAAGCTAAACT
Flanking Amino Acid:
LRRIESSDLSGANRIVLEDS
Intron Amino Acid Position:
1124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
59.9
41.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.7
85.1
29.5
Minor 5ss
34
-1.8
3.6
45.4
49.7
Minor BPS
54.3
0.21
2.1
77.57
44.5

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382