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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69578434_69579957_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69578434 - 69579957
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
CTTAAAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTCTTAAAAT
Flanking Amino Acid:
AVKELNIQEYRQHPCSQDNG
Intron Amino Acid Position:
1194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.1
35.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
66.8
0.38
1
58.5
40.6
Minor 5ss
35.2
-1.7
3.2
47.2
42.3
Minor BPS
70
0.71
1.7
88.96
35.8

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382