Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69580084_69581487_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

69580084 - 69581487

Intron Length:

1404

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TTGATTTTTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GGATTTTTAATT

Flanking Amino Acid:

VLLQDELSCGEPPTCSPQQF

Intron Amino Acid Position:

1236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.3

1.07

0.7

84.4

33.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

73.8

0.54

1.1

74.6

39.1

Minor 5ss

36.9

-1.5

51.2

45.2

Minor BPS

67.3

0.62

1.2

73.78

37.2

Associated Gene:

Gene:

LRP6

Ensembl Gene ID:

ENSAPLG00000012219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012751

69479190 - 69590571

111382