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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69583506_69585292_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
69583506 - 69585292
Intron Length:
1787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAACCCT
5'SS Class:
weak_major
3'SS Sequence:
TCCTTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATGAT
U12 Branch Point Sequence:
GCTTCTATAGTA
Flanking Amino Acid:
DSSDEQGCCKYTTEEPAPQP
Intron Amino Acid Position:
1354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1.2
52.5
44.3
Major BPS
66.9
0.42
1.3
59.7
46.7
Major PPT
79
0.65
0.7
72.8
32.1
Minor 5ss
41.9
-0.9
3.2
58.3
45.8
Minor BPS
48.8
-0
1.8
60.68
39.9

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382