About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_69585524_69586757_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
69585524 - 69586757
Intron Length:
1234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTGAATTGAATA
Flanking Amino Acid:
HPSSLSGSLPGMSRGKSVIS
Intron Amino Acid Position:
1431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
83
0.74
0.7
81.8
30.3
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
49.5
-0
1.6
61.86
38.4

Associated Gene:

Gene:
LRP6
Ensembl Gene ID:
ENSAPLG00000012219
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012751
69479190 - 69590571
111382